Stories tagged Cells

Jul
10
2010

Bloodshed happens

Bags of blood
Bags of bloodCourtesy spike55151

A lot of blood is shed every day. Many lives are being saved when that shed blood is replaced. Donated blood is only good for a few weeks. Also there is the worry about contamination (HIV, Aids, etc.). What the world needs is a way to manufacture and deliver blood as needed.

Wanted-fresh blood on tap

Our Defense Department's research division (DARPA) wants a a self-contained system that could turn out 100 units of universal blood a week for eight weeks. The system needs to withstand war front conditions and be not much bigger than a refrigerator.

$2 million awarded

That task and $1.95 million was assigned to Arteriocyte less than two years ago. (see Popular Mechanics, Dec 2008 - Bringing Stem Cells to War: Meet the Blood Pharmers). The technology, called Nanex, uses a nanofiber-based structure that mimics bone marrow in which blood cells multiply, according to the company. (cnet News)

FDA approval sought

This week an initial shipment of their pharmed blood product was sent to the Food and Drug Administration for an independent evaluation. If approved, their cost of $5000 per unit of manufactured blood will need to be reduced.

Still, given the price tag of transporting and storing donated blood, Darpa’s betting that a unit of pharmed blood will make financial sense once it costs less than $1,000. Wired

Mar
28
2010

Cell Protein: Illustration of protein chain in the human cell.
Cell Protein: Illustration of protein chain in the human cell.Courtesy Nicolle Rager and National Science Foundation
Science Buzz has had a lot of articles on organ transplants over the years but a new report on liver transplants in children adds a new twist. Currently, severe organ damage or failure requires an organ transplant, preferably one from a donor with a histocompatibility similar to the recipient. In the case of severe liver failure in children, there is often no time to wait for a compatible organ and an incompatible organ is used requiring patients to take anti-rejection drugs (immunosuppression) for the rest of their life. In fact, 70% of all liver transplants require anti-rejection drugs.

Fortunately, the liver is one organ that has the ability to regenerate itself, especially in very young patients. The child patient is given a small section of donated liver, enough to allow the body to function properly, while leaving a small portion of their own liver intact. Hopefully, after a few years, the patient’s original liver will begin to repair and regenerate itself. The doctor can than gradually reduce the quantity of anti-rejection drugs, causing the body to slowly attack and destroy the donated liver segment. Eventually the patient will be removed from anti-rejection drugs completely, have their own liver back, and no signs of the temporary donated liver.

The liver is unique in its regenerative properties; for humans, that is. In other animals, such as amphibians, entire limbs can regenerate. Scientists are researching the role proteins play in cell regeneration in hopes that stimulating certain proteins in other organs of the body will encourage them to regenerate like the liver can.

Mar
25
2010

Painting a new picture of human evolution: A finger bone found in a cave in southern Siberia may add another species to human evolution. (Painting by Charles R. Knight, AMNH).
Painting a new picture of human evolution: A finger bone found in a cave in southern Siberia may add another species to human evolution. (Painting by Charles R. Knight, AMNH).Courtesy Mark Ryan
The bone of a single pinky finger found in a cave in southern Siberia may indicate a new branch in the human family tree. The find could show that besides Neanderthals and Homo sapiens, a third lineage of humans may have shared the ancient landscape of prehistoric Russia.

The piece of finger was found in Denisova cave located in Russia’s Altai mountains by scientists from the Russian Academy of Science. The bone was recovered from sediment layers that have also yielded signs of Neanderthals (Homo neanderthalensis) and modern humans (Homo sapiens). Radiocarbon dating set the age of the layers between 48,000 and 30,000 years old.

Scientists from Germany’s Max Planck Institute and others sequenced 16,569 base pairs of the finger bone’s mitochondrial DNA genome, and the results indicate the new hominen shared a common ancestor with both neanderthals and ancient modern humans sometime around a million years ago. The research team included Michael Shunkov and Anatoli Derevianko, the two Russian archaeologists who discovered the bone in 2008. The study appears in the journal Nature.

Further sequencing of DNA from cell nucleuses will be done next, and could help pinpoint the hominen’s exact origins. If confirmed, the discovery would mean four different species of humans (the 4th would be the Indonesian Hobbit Homo floresiensis) co-existed on Earth some 40,000 years ago.

SOURCE and LINKS
Science Now story
More about human evolution at Becoming Human
Radiocarbon dating

Feb
17
2010

Ibex: Capra ibex
Ibex: Capra ibexCourtesy Nino Barbieri
A recent article in the Journal of Archaeological Science reminded me of the importance of the Scientific Method Often we hear new and exciting scientific theories that seem plausible, especially if these ideas are presented in prestigious journals. However, the beauty of the Scientific Method is its verifiability, whether or not the data can be recreated through repetitive testing (If we truly believed everything the first time, our budding young scientists would have nothing to do!)

Michael Campana from the University of Cambridge and colleagues from across the UK and Ireland recently ran a sequence of DNA tests on 18th and 19th century parchments made from animal skins in order to reveal the complexities of ancient parchment analysis. Parchment is one of the most valuable archaeological and historical artifacts that can be used to understand not only language and history, but DNA testing on it can reveal clues to animal population studies, animal husbandry, different historical animal breeds, and provenance (where the animal or skins originated from). In the case of the Dead Sea Scrolls, DNA testing on the parchment could reveal what type of animal was used and possibly where it came from, providing additional data for questions regarding who wrote the scrolls.

Campana and colleagues analyzed both mitochondrial and autosomal genetic data using stable isotope, genetic, phylogenetic and ion beam analysis. All samples were considered to be well preserved and ideal samples for accurate testing. All but one parchment produced multiple DNA sequences that matched several different species including cow, goat, sheep, and even human. In other words, a parchment assumed to be made from one individual of one species, gave conflicting results as more than one species or more than one individual. Of course it can be assumed the parchment was not made of human skin and therefore human genetic data must have came from handling and processing of the parchment, but parchments can also be contaminated in long-term storage or contact with each other. Testing results can also be skewed by glues and inks or other preparatory treatments used to improve the surface. All of these factors need to be considered when testing truly ancient parchment like the Dead Sea Scrolls.

Previous DNA test results from 2001 and 1996 on the Dead Sea Scrolls produced results pointing to a single species, either ibex (Capra ibex) or domestic goat. While these results may indeed be correct, the likelihood that the results were so exact, when testing such as Campana's and colleagues on better preserved and more recent parchment were so complex, questions the accuracy of the earlier DNA testing. Of course we must not forget, precious artifacts like the Dead Sea Scrolls can not be needlessly dissected to offer unlimited samples for DNA testing labs. But as, Campana states, “Improving our understanding of parchment's DNA content would allow us to develop a predictive model for sampling of historic manuscripts.”

So the messages for today, bravo for the Scientific Method and go see the Dead Sea Scrolls at the Science Museum! Learn the science, archaeology, history and more that surround these amazing artifacts. Ask questions like: did the scroll writers choose ibex for some scrolls over goat because they thought these documents were so special or was ibex as readily available as any other animal species? Did the handling of the scrolls by shepherds who supposedly found them contaminate the actual scroll DNA with sheep, human or goat DNA? What can DNA testing tell us about other ancient artifacts? As long as there are unanswered questions, no matter how small, there will be a need for scientific investigation; which is good news for our future scientists!

Feb
09
2010

Playing with fire: Delicious fire.
Playing with fire: Delicious fire.Courtesy esherman
The people of the world wait, their breath held, their tongues clenched between their teeth, open cans of Fresca frozen halfway to their mouths. What do you mean, JGordon? Does soda give me cancer? Or not?

Well?!

Don’t worry, folks. It’s mostly “or not.” Or is it? Or not.

You may have heard (or read—I call it “hearing with your eyes”) that soft drinks might raise your chances of developing cancer. That was probably hard to hear (or read—I call “listening through your face-holes”), because I know you’re generally pro-soda, and generally anti-cancer, and you had been living your life in the hope that there would never be any conflict between the two. You can probably go on living like that, because it’s unlikely that pop is really going to give you cancer, but you should be aware that the world is a complicated place, and your soda and your cancer are sadly not excluded from the complications.

See, a the results of a study out of the University of Minnesota were recently published claiming that there seemed to be a link between the regular consumption of soft drinks (sugar-sweetened carbonated beverages) and a higher incidence of pancreatic cancer. Pancreatic cancer isn’t one of the fun cancers (like, ah, cancer of the… nothing). Although relatively rare, the three-year survival rate for people diagnosed with pancreatic cancer is about 30%, and the survival rate after five years is only 5%.

The study was based on a 14-year survey of 60,524 men and women in Singapore. Of that group, 142 people developed pancreatic cancer. Examining the lifestyles of those who did and did not develop cancer, the researchers found that people who drank two or more soft drinks a week (5 was the average) had an 87% increase in their chances of getting cancer. And because Singapore is a fairly wealthy country with good health care, the scientists think that the results could apply fairly well to western countries as well.

Oh, no! Right? I can’t give up RC Cola!

Well… eh. The thing to keep in mind is it’s all very complicated. Even if there was a direct link between sift drink consumption and pancreatic cancer, your chances of developing the cancer, even as a soda drinker, would still be very small. But, the thing is, there isn’t necessarily a direct link between the two; there’s an association here, but maybe not a causal link. That is, people who drink soda are more likely to get pancreatic cancer, but we don’t know it’s the soda that causes the cancer.

Soft drink consumption itself was associated with behavior like smoking and red meat consumption, so it’s difficult to say that it’s just the soft-drinking (as it were) that contributes to the increased cancer risk.

Researchers do think, however, that it’s possible that soda could be involved in a causal relationship with the cancer. The high sugar levels in soda probably contribute to increased insulin production and presence in the body, which may contribute to pancreatic cancer cell growth. The study also found, however, that there was no association between fruit juice consumption and pancreatic cancer, which sort of makes me wonder. Lots of fruit juice, after all, is very sugary (even if it’s not quite so sweet as most soda). So does it have something to do with the type of sweetener used? Most soda in this country is sweetened with corn syrup, but that’s not necessarily the case in other countries (see Coca Cola for an example), and there’s some debate as to how the body might react to different sweeteners.

Anyway, you aren’t completely taking your life in your hands if you finish that can of Fresca. (Fresca was probably a bad example, seeing as how it uses artificial sweeteners, and will probably give you a totally different kind of cancer.) You’re better off just taking the dip out of your mouth. It’s gross with Fresca anyhow.

Feb
08
2010

The Discovery of King Tut: Howard Carter, staging the discovery of King Tut, in 1922.
The Discovery of King Tut: Howard Carter, staging the discovery of King Tut, in 1922.Courtesy Wiki Media Commons
Science Buzz bloggers have been buzzing about this topic for some time, but as the time draws near, I thought I would jump in for those new to Science Buzz. The rapidly expanding field of DNA analysis is now being used to verify the genealogy of the great kings of Egypt. Zahi Hawass, chief of the Supreme Council of Antiquities in Egypt, has announced that on February 17th, 2010 he will be revealing the results of DNA testing on the famous mummy of the boy king, Tutankhamun. DNA testing has already been done on King Amenhotep III (who reigned from approximately 1388 to 1351 BCE) for comparison as he is believed to be either Tut’s father or grandfather. The mummy of Amenhotep’s son, Akhenaten (who could be Tut’s father), has yet to be found. Researchers also plan to test the DNA of two mummified fetuses found in the tomb to determine if they are related to Tut and shed light on whether King Tut’s bride, daughter of Akhenaten, was his full sister or half sister.

Despite the popularity of King Tut and the splendid artifacts found in his tomb, he is actually only a minor figure in the history of Egyptian pharaohs, reigning for a mere 10 years in a time of great unrest. The story of Akhenaten is more interesting. Akhenaten, who ruled from 1352 to 1336 BCE, is famous for changing both religion and artistic style in Egypt, what is now known as the Amarna Period. Akhenaton introduced a new monotheistic cult of worship surrounding the sun disc Aten and excluded all other Egyptian gods from being worshipped in an effort to suppress the powerful priesthood of Amun.

Pharaoh Akhenaten: Classic Amarna Period sculpture of the Pharaoh Akhenaten.
Pharaoh Akhenaten: Classic Amarna Period sculpture of the Pharaoh Akhenaten.Courtesy Hajor and Wiki Media Commons
Artwork during the Amarna Period took on a more naturalistic style and often emphasized affectionate family scenes of the Pharaoh with his wife Nefertiti and their children. Of interest to many art historians is the depiction of Akhenaten himself. He is represented with an accentuated feminine appearance, rounded protruding belly, wide hips, long slender limbs, and a long thin face. Some believe it is a purposeful political depiction stressing his belief in equality of the sexes, some suggest he was a hermaphrodite, and others suggest he had Marfan’s syndrome. People with Marfan’s syndrome are usually very tall with long thin arms and legs, have thin faces, and funnel shaped chests. Unfortunately, until his mummy is located this will remain a mystery.

When Akhenaten died, the priests of Amun regained power, striking Akhenaten’s name from Egyptian records, reversed all of his religious and governmental changes, and returned the capitol to Thebes. His son, Tutankhaten changed his name to Tutankhamun to honor Amun and became the now famous boy king ruling from 1336 to 1327 BCE.

Mr. Hawass has announced plans to test all the royal mummies using their new $5 million DNA lab in the Egyptian museum. However, there is some concern in the scientific field that he will not submit results to labs outside Egypt for independent verification as is common practice in DNA testing. For example, DNA results of Hatshepsut, Egypt’s famous, powerful and only female pharaoh have never been released. Our fascination with the pharaohs is sure to continue for many more centuries.

Feb
06
2010

Henrietta Lacks (1920-1951): The Harvard Gazette is copyrighted, but no copyright for the image is specified by the magazine.
Henrietta Lacks (1920-1951): The Harvard Gazette is copyrighted, but no copyright for the image is specified by the magazine.Courtesy Harvard University Gazette

Henrietta Lacks 1950s Cells Still Alive, Helping Science

Even though Henrietta Lacks died in 1951, her cells are still alive.
By 1954, Henrietta Lacks' cells known as HeLa were used by Jonas Salk to develop a vaccine for polio.

"In the half-century since Henrietta Lacks' death, her ... cells ... have continually been used for research into cancer, AIDS, the effects of radiation and toxic substances, gene mapping, and countless other scientific pursuits".

The Immortal Life of Henrietta Lacks

"A new book by Rebecca Skloot, The Immortal Life of Henrietta Lacks, examines the extraordinary impact of HeLa on science and the effects of that unchosen legacy on Lacks’ family." Wired

Jan
02
2010

New device prints human tissue

The manufacture of replacement body parts just might happen this year. Organovo just took delivery of the world's first production grade 3D bio-printer developed for them by Invetech.
The printer includes two print heads, one for placing human cells, and the other for placing a hydrogel, scaffold, or support matrix. The position of a capillary tip, can position droplets of "ink" containing virtually any cell type, with micron accuracy.

"Invetech plans to ship a number of 3D bio-printers to Organovo during 2010 and 2011 as a part of the instrument development program. Organovo will be placing the printers globally with researchers in centers of excellence for medical research." Organovo press release

Dec
13
2009

Nanosensors measure cancer biomarkers in blood

For the first time, a team led by Yale University researchers has used nanosensors to measure cancer biomarkers in whole blood. The new device is able to read out biomarker concentrations in a just a few minutes. Extremely small concentrations are being measured, the equivalent of detecting a single grain of salt within a swimming pool size volume of liquid.

"The new device could also be used to test for a wide range of biomarkers at the same time, from ovarian cancer to cardiovascular disease, Reed said. Science Daily.

Learn more by reading paper published in Nature Nanotechnology

Authors of the paper, "Label-free biomarker detection from whole blood", include Eric Stern, Aleksandar Vacic, Nitin Rajan, Jason Criscione, Jason Park, Mark Reed and Tarek Fahmy (all of Yale University); Bojan Ilic (Cornell University); David Mooney (Harvard University).

Distinct components within the sensor perform purification and detection. A microfluidic purification chip simultaneously captures multiple biomarkers from blood samples and releases them, after washing, into purified buffer for sensing by a silicon nanoribbon detector. This two-stage approach isolates the detector from the complex environment of whole blood, and reduces its minimum required sensitivity by effectively pre-concentrating the biomarkers. Nature Nanotechnology, Dec 13, 2009

Nov
16
2009

He looks happy, but it's a facade: He's very worried about phthalates, BPAs, and his manliness. (Good thing that's a glass bottle.)
He looks happy, but it's a facade: He's very worried about phthalates, BPAs, and his manliness. (Good thing that's a glass bottle.)Courtesy sirgabe
There’s something I want to get out of the way straight off the bat: the original title for this post was “Monday Nutrition Extravaganza: Chemicals in your food, playing with your manhood!” And while that has a certain whimsical charm, a re-read revealed hidden, disturbing meaning in those words. And I didn’t want to subject you Buzzketeers to that. I just thought you should know.

So, moving on, what’s this stuff playing with our manhood, now?

Chemicalz in our foodz! And stuff.

Earlier today, I came across this study about how there seems to be a correlation between high levels of chemicals call phthalates in pregnant mothers’ urine, and a lowered incidence of “masculine play” in their male children. (“Girls’ play behavior” didn’t seem to be affected.)

Interesting, interesting.

Phthalates are a group of chemicals added to plastics to make them softer and more pliable. We all like soft plastic—no one is arguing that!—but phthalates are all over the place, and increased exposure to them (all sorts of products and packaging use phthalates) is raising concerns about how those chemicals affect us, particularly during childhood development. See, phthalates are antiandrogens, meaning that they mess with the way your body works with hormones like testosterone. Testosterone plays an important role in how we physically develop, and perhaps in how we act. The boys whose mothers had higher levels of a couple kinds of phthalates demonstrated less “male-typical” behavior. The study looked a preferred toy types (trucks versus dolls), activities (“rough-and-tumble play”), and “child characteristics.”

Now, these are slightly sticky things to go judging kids on. Some folks might argue that these characteristics aren’t linked to biology so much as social conditioning. And it feels a little weird quantifying characteristics in children (and, let’s be honest here, characteristics which may not have a solidly identified “norm,” but nonetheless have all sorts of social and sexual baggage that we are uncomfortable with and often deal with in the worst ways). However, there does seem to be some statistical association here, whatever the causal relationship is. One hypothesis is that phthalates alter fetal production of testosterone at an important period of development, affecting “brain sexual differentiation.” It’s not so hard to imagine—a year ago I did a post on how certain common chemicals in pregnant mothers seemed to be causing penis deformities in their male children. The culprit there? Phthalates. The women in that story, however, had had exceptionally high exposure to phthalates (their jobs had them in constant contact with phthalate-containing hairspray), so it’s probably not something to lose sleep over, but it’s worth knowing.

And while phthalates aren’t supposed to be in food packaging, the next article I came across (this is an extravaganza, after all) deals with another plastic additive, BPA, that is found in food packaging, and which may also cause some hormone-related havoc.

BPA has come up on Science Buzz before. It’s in all sorts of packaging and bottles (it’s the reason your over protective mother doesn’t want you to use nalgene bottles) and it may affect tissue development, potentially increasing cancer risks.

We don’t care about that, though, right? Sure, cancer is out there, but in the future, not right now, you know? I know. But BPA’s latest appearance in the news may bring some immediacy to the concern over its use. Concern for some people. For men, I mean.

Chemical BPA in workers related to sex problems, says the Washington Post. “Sex problems”? We don’t want those! Chinese men working in a factory that uses BPA were found to have high rates of sexual problems. (I won’t be defining what “sexual problems” are because whatever you just imagined was probably correct.) Now, these guys have BPA levels about 50 times higher than the average American. But, still, something like 90% of Americans have detectable levels of BPA in their urine. Again, probably nothing to lose a lot of sleep over, but something worth knowing about. This professor is of the opinion that BPAs should be banned, even though most of us will probably never be exposed to dangerous levels of it, because a) it’s not a natural part of our diet; b) it’s not actually necessary in plastics processing; c) it accumulates in the body, and we still don’t know what level at which it begins to become harmful (ask those Chinese guys); and d) it’d be relatively easy to get it out of the food and water supply, unlike some other potentially harmful chemicals.

Accepting that scientific studies are necessarily very focused to eliminate variables, both of these stories still left me wondering what affect phthalates and BPAs have on women and girls. On one hand, one tries to avoid the mindset that average human physiology=male physiology, but on the other hand it’s usually just males that have penises, making their medical problems a little more hilarious.

There are so many… things out there, and they’re all doing… stuff! Interesting to know.