Stories tagged Chemical Reactions

Jan
24
2013

Sniffing Out Cancer: Amherst chemists develop a way to "smell" cancer cells.
Sniffing Out Cancer: Amherst chemists develop a way to "smell" cancer cells.Courtesy Jeremie63
Chemists from the University of Massachusetts Amherst have developed a way to quickly and accurately detect and identify metastatic cancer cells in living tissue, in much the same way that your nose can detect and identify certain odors.

The smell of a rose, for example, is a unique pattern of molecules, which activates a certain set of receptors in your nose. When these specific receptors are triggered, your brain immediately recognizes it as a rose.

Similarly, each type of cancer has a unique pattern to the proteins that make up its cells. The Amherst chemists just needed a "nose" to recognize these patterns. What they came up with was an array of gold nanoparticle sensors, coupled with green fluorescent proteins (GFP). The researchers took healthy tissue and tumor samples from mice, and trained the nanoparticle-GFP sensors to recognize the bad cells, and for the GFP to fluoresce in the presence of metastatic tissues.

This method is really sensitive to subtle differences, it's quick (can detect cancer cells within minutes), it can differentiate between types of cancers, and is minimally invasive. The researchers haven't tested this method on human tissue samples yet, but it holds some exciting potential.

Jul
18
2012

Sprayable Battery: Move over spray-tan, there's a new aerosol in town.
Sprayable Battery: Move over spray-tan, there's a new aerosol in town.Courtesy Alex Walker
Researchers from Rice University have rethought the battery. Typically, batteries are made up of 5 layers: a positive and negative electrode, each with a metal current collector, and a polymer separator. These layers are manufactured in sheets and then rolled into cylinders. Rice researchers realized that each of these layers were available, or could be created, in sprayable form. They used lithium titanium oxide and lithium cobalt oxide for the anode and cathode, existing metallic paints and carbon nanotube mixtures for the current collectors, and a chemical hodge-podge with a very lengthy name for the separator layer. The result is an ultra thin (a fraction of a millimeter thick) lithium ion battery.
In their first experiment, researchers sprayed each consecutive layer onto nine bathroom tiles, topped with a solar cell. The resulting batteries were able to power 40 LEDs for six hours.
In its current state, this method is too toxic to be used outside a controlled environment, but with a little tweaking, a safe alternative will be found. At that point, any surface could be a battery!

Jul
13
2012

Evolution timeline from 1882: This caricature of Darwin's theory appeared in the 1882 Punch Almanac. The recent evolution timeline created by Kyrk and Sezen is a bit of an improvement.
Evolution timeline from 1882: This caricature of Darwin's theory appeared in the 1882 Punch Almanac. The recent evolution timeline created by Kyrk and Sezen is a bit of an improvement.Courtesy Public domain via Wikipedia
This cool evolution timeline is really fascinating and fun to mess around with. I'm guessing Charles Darwin would agree it's a vast improvement over the one that appeared in Punch Almanac in1882 when he was still alive (see image at right). This new one was created by John Kyrk, a biology-trained artist in San Francisco in collaboration with Dr. Uzay Sezen, a plant biologist from the University of Georgia. The timeline is available in several languages and would be very useful in a classroom setting when studying evolution and paleontology.

The site is interactive and follows the evolution of our universe from the Big Bang to the present. You start it by clicking and sliding the red pyramid on the right. As you scroll across the timeline, various events in the history of the Universe, Solar System and ultimately, the Earth show up on the screen. All along, links also appear that either explain concepts or show examples of them. In the upper left hand corner is a menu linking you to several corollary Flash animations by Kyrk explaining cell biology and how RNA, DNA, cells, water, and other basic elements of life (including viruses) operate. Kyrk thinks animated illustrations are very useful in teaching and remembering ideas and concepts.

All the phases of Earth’s formation and development are covered in the evolution timeline, including the Late Heavy Bombardment, Snowball Earth, Cambrian Explosion, stromatolites, photosynthesis and iron formation. Once life begins to rise up, your computer screen will run amok with Earth’s diverse species populations from the one-celled animals, trilobites and fish to amphibians, reptiles, dinosaurs and mammals – the whole shooting match. All the major extinction events are shown, too.

The site also contains a link to this YouTube video version of someone else working the timeline so you can just sit back and watch how it happens, But I recommend working the interactive page yourself. A lot more happens and is available than the video allows you to see. Note that you’ll need Flash for it to run on your computer.

I wonder how Darwin would have reacted if he were able to see his theory illustrated in this way?

SOURCES
Evolution Timeline

Feb
19
2012

The Blue Heron: the Large Lakes Observatory's research vessel is owned by the University of Minnesota-Duluth.
The Blue Heron: the Large Lakes Observatory's research vessel is owned by the University of Minnesota-Duluth.Courtesy Mark Ryan
Last October, I attended the Geological Society of America’s annual meeting held here in Minneapolis. The convention presented plenty of opportunities to hear the latest ideas in geology, paleontology, and planetary science but the highlight for me was being able to join a GSA field trip on Lake Superior aboard the research vessel, the Blue Heron.

Blue Heron interior: Mid-deck area includes monitoring station, right, and one of two dry labs, background left, serving as a snack table during our trip.
Blue Heron interior: Mid-deck area includes monitoring station, right, and one of two dry labs, background left, serving as a snack table during our trip.Courtesy Mark Ryan
The 86-foot vessel is owned by the University of Minnesota-Duluth (UMD) and operated by the Large Lakes Observatory (LLO), an organization created in 1994 for investigating the geochemical and geophysical properties of large lakes, and their global impact. To accomplish this research, the LLO required a worthy vessel for limnological research, and the Blue Heron was purchased just three years later.

The vessel docks at the Corps of Engineers Vessel Yard on Park Point (aka Minnesota Point), a natural sand bar separating Duluth’s harbor basin from Lake Superior. The ten-mile spit was created by the lake’s wave action on material deposited by the St. Louis river, and is supposedly the largest freshwater sand bar in the world. Field trip leaders Doug Ricketts, the marine superintendent at LLO, and Charlie Matsch, professor emeritus of geology at UMD, greeted arriving participants and divided us into two groups. While one group spent the morning on Lake Superior, the other visited geological highlights in the Duluth area with professor Matsch. In the afternoon the groups switched places.

I joined the morning shift on the lake with a dozen geologists made up of GSA attendees from Minnesota, Wisconsin, and City University of New York. Besides Doug Ricketts and the ship’s five crew members, regents professor Tom Johnson, and the director of the LLO, professor Steve Colman, were also on hand to help demonstrate and explain the Blue Heron’s research capabilities.Lakebound through the harbor: As we head toward Lake Superior, regents professor Tom Johnson, left, and  director of the LLO, professor Steve Colman, discuss the morning agenda with one of the field trip passengers. The yellow tow fish used for profiling the lake bottom sets on the deck in the background.
Lakebound through the harbor: As we head toward Lake Superior, regents professor Tom Johnson, left, and director of the LLO, professor Steve Colman, discuss the morning agenda with one of the field trip passengers. The yellow tow fish used for profiling the lake bottom sets on the deck in the background.Courtesy Mark Ryan

Safety first: Blue Heron chief mate, John Simenson, goes over some of the vessel's safety rules.
Safety first: Blue Heron chief mate, John Simenson, goes over some of the vessel's safety rules.Courtesy Mark Ryan
We shoved off right on schedule, heading across the harbor toward the Superior entrance on the Wisconsin end of the sand bar. The crew spent this time going over the ship’s safety rules - how to descend ladders, which alarms meant what, how to communicate with the bridge - that sort of thing. We then made a quick tour of the facilities. The Blue Heron is equipped with a wet lab on the open deck and two dry labs inside, and all sorts of data gathering equipment for geophysical, geochemical, and biological sampling. These include multibeam sonar for profiling the lake bottom and sub-bottom, several coring instruments for collecting sediment samples, and water samplers able to collect at various depth levels in the water column while also measuring such things as temperature, depth, pH levels, and conductivity. There’s gear for tracking lake currents, and plankton nets and a trawl for gathering biological data. Inside, both above and below deck, computers record, display and analyze the gathered data. Many of the off-ship instruments can be monitored and controlled on-board from computer consoles.

Out on the big lake: Lake Superior is the deepest and largest of the Great Lakes, and contains ten percent of the world's fresh surface water.
Out on the big lake: Lake Superior is the deepest and largest of the Great Lakes, and contains ten percent of the world's fresh surface water.Courtesy Mark Ryan
The R/V Blue Heron is outfitted to carry five crew members and six researchers and can stay on the lake, around the clock, for 21 days between port calls. It’s used mainly on Lake Superior, the largest and least studied of the Great Lakes. Shipboard amenities are sparse (there’s no television or DVD) but include eleven bunks, a full galley for food preparation, dining table, shower, and of course, the "head", or as you landlubbers like to call it, the toilet. Internet service is sometimes available when the vessel is near shore.

Yellow fish deployed: The EdgeTech CHIRP/sidescan sonar is submerged and towed behind the Blue Heron for gathering bottom data.
Yellow fish deployed: The EdgeTech CHIRP/sidescan sonar is submerged and towed behind the Blue Heron for gathering bottom data.Courtesy Mark Ryan
Upon entering Lake Superior, the crew set to work demonstrating some of the vessel’s science gear, which is pretty much the same kind of instrumentation used in oceanographic research. Just beyond the Superior entrance, the EchoTech CHIRP/sidescan sonar tow fish was lowered from the Blue Heron’s stern. This bright yellow instrument is towed underwater behind the vessel as it makes several passes over the lake bed, and able to gather hydrographic and bathymetric data. One function is to send out an intermittent, low frequency “chirp” pulse that can penetrate the sub-bottom and record changes in its geophysical properties. The sonar data is processed using on-deck computers.The first demonstration was a scan of the underwater channel of the Nemadji River, a Wisconsin tributary to the lake. The mouth of the Nemadji has been drowned by a process called post-glacial rebound or more scientifically, differential isostatic rebound. During the last ice age, a mile thick sheet of ice covered the region and placed enormous pressure on the earth’s crust, depressing it downward. As the glaciers retreated, that enormous weight was gradually removed, and the lake basin began to rebound (a process still going on today). But the northern and eastern ends of Lake Superior basin are rebounding at a faster rate, tilting the water southward and to the west and subsequently flooding those areas of the shoreline.

CHIRP/sidescan sonar monitors: Left display shows a sidescan view of the bottom.  Right monitor reveals CHIRP sub-bottom profile of drowned channel of the Nemadji river.
CHIRP/sidescan sonar monitors: Left display shows a sidescan view of the bottom. Right monitor reveals CHIRP sub-bottom profile of drowned channel of the Nemadji river.Courtesy Mark Ryan
As the submerged tow fish was doing its stuff, we all gathered at a couple workstations in the lower deck dry lab to watch as images appeared on the computer screens. In one, you could plainly see the distinct profile of the Nemadji’s drowned riverbanks. Lower deck dry lab: Marine superintendent Doug Ricketts explains the R/V Blue Heron's data gathering capabilities to field trip participants.
Lower deck dry lab: Marine superintendent Doug Ricketts explains the R/V Blue Heron's data gathering capabilities to field trip participants.Courtesy Mark Ryan
The other monitor displayed bathymetric information being picked up by the duel frequency sidescan sonar. Printouts of the lakebed topography, created from a mosaic of stitched-together scans, were laid out on a worktable with several charts and maps.

Yellow tow fish retrieval: Blue Heron marine technician Jason Agnich (left) and seaman Peter Norick haul in the EdgeTech sidescan sonar tow fish.
Yellow tow fish retrieval: Blue Heron marine technician Jason Agnich (left) and seaman Peter Norick haul in the EdgeTech sidescan sonar tow fish.Courtesy Mark Ryan
For the next demonstrations, the Blue Heron moved out several miles onto the big lake. We’d all been warned of the lake’s fickle weather, and told to bring proper attire, just in case. Having been raised in Duluth, I was well acquainted with Superior’s moodiness, especially in autumn, so I brought along rain gear, a jacket, and an extra sweatshirt, expecting the worst. But I was most comfortable in jeans and a t-shirt. Cloud cover was sporadic, and while the water temperature was only around 49 degrees, the air temperature hovered in the mid to upper 70s during the entire excursion. We couldn’t have hoped for a nicer day; a perfect Duluth day, as we used to call them.

While some of the group watched the crew prepare for the next presentation, others enjoyed lunch (sandwich, chips, fruit and a cookie) at the galley dining table. During my lunch break Tom Johnson told me the story of how the university came to own the research vessel. In her previous life, the Blue Heron was known as the Fairtry a commercial fishing trawler that fished the Grand Banks in the northwest Atlantic (like the Andrea Gail in The Perfect Storm). UMD purchased it in 1997 and Tom sailed it from Portland, Maine, through the St. Lawrence Seaway and across the Great Lakes to Duluth. Despite some minor engine problems at the start, he said it was a fantastic two-and-a-half week trip. Over the next winter, the Fairtry was converted into a limnological research vessel and re-christened the Blue Heron.

Water sampling carousel: GSA field trip participants listen as LLO's Doug Ricketts, center, goes over some of the geophysical and geochemical data gathered by the Blue Heron's water sampling carousel.
Water sampling carousel: GSA field trip participants listen as LLO's Doug Ricketts, center, goes over some of the geophysical and geochemical data gathered by the Blue Heron's water sampling carousel.Courtesy Mark Ryan
Meanwhile, out on the back deck, the crew was ready to launch the next instrument, a carousel of canisters called Niskin bottles used for sampling the water column. Topside control: Marine tech Jason monitors the submerged water sampling carousel, which can be controlled to collect water samples at different levels, as well as additional water quality data.
Topside control: Marine tech Jason monitors the submerged water sampling carousel, which can be controlled to collect water samples at different levels, as well as additional water quality data.Courtesy Mark Ryan
This device is lowered into the lake and controlled remotely from the deck, and can collect samples at various depths into any one of its dozen canisters. It can also measure temperature, conductivity, pH balance, transparency, dissolved oxygen levels and other tests. After deployment, marine technician, Jason Agnich, sat at a computer workstation just inside the hatch, and easily controlled the carousel with a joystick while monitoring its progress on a couple electronic displays.

Gravity corer: Marine technician Jason Agnich helps launch the gravity corer, retrieves the sample, and lays it out on the wet lab workbench for study.
Gravity corer: Marine technician Jason Agnich helps launch the gravity corer, retrieves the sample, and lays it out on the wet lab workbench for study.Courtesy Mark Ryan
We moved a little farther down lake where two coring instruments, a spider-framed multi-corer, and an arrow-like gravity corer were put into action. The first can collect several shallow core samples by lowering it by winch to the lakebed, while the latter is dropped like a giant dart deep into the sub-bottom sediment for one large core.

Sediment sample examination: Tom Johnson, left, and Steve Colman examine one of the sediment samples collected by the Blue Heron's multi-corer from the bottom of Lake Superior.
Sediment sample examination: Tom Johnson, left, and Steve Colman examine one of the sediment samples collected by the Blue Heron's multi-corer from the bottom of Lake Superior.Courtesy Mark Ryan
After each was raised back to the surface, the collected core samples were removed from their tubing and laid out on the wet lab table for study. We all huddled around the workbench as each core was cut open with a knife so participants could take a closer look. The sediment cores were composed of a densely packed fine-grained mucky silt as brown as milk chocolate, and appeared more appropriate for a scatological study than a geological one, to me anyway. But that didn’t stop some of us from taking home a small plastic bag of it as a souvenir.

View of the Blue Heron's wet lab: Lake bottom sediment samples are examined on the workbench.
View of the Blue Heron's wet lab: Lake bottom sediment samples are examined on the workbench.Courtesy Mark Ryan
View from the Blue Heron: As the research vessel heads back to port, autumn colors brighten up Duluth's distant hillside.
View from the Blue Heron: As the research vessel heads back to port, autumn colors brighten up Duluth's distant hillside.Courtesy Mark Ryan
As we made our way back toward the harbor, I stood at the starboard rail and took in the beautiful autumn colors lighting up the lake’s distant North Shore. We were three, maybe four miles offshore but I was able to pick out my old stomping grounds in Duluth’s east end. The old neighborhood – like much of the city - was built up on terraces formed by past shoreline configurations of prehistoric Lake Superior. Duluth’s Skyline Parkway, a boulevard that skirts the hilltop across the length of the city was built on an old gravel beach line of Glacial Lake Duluth when the water surface was nearly five hundred feet above its present level. The bridge over the mouth of the Lester River was just barely discernible from where I stood but it was easy to spot the large swath of dark pine forest that encompassed Lester Park and Amity creek (the western branch of Lester river) where my friends and I used to hang out. It’s also where Charlie Matsch would guide our group later in the afternoon. He brought us there to examine the Deeps, my favorite old swimming hole carved out of the massive basalt flows that extruded from what’s now the center of Lake Superior during the Mid-continental rifting event that took place nearly a billion years ago.

Harbor bound: The Blue Heron heads back to port through the Duluth canal.
Harbor bound: The Blue Heron heads back to port through the Duluth canal.Courtesy Mark Ryan
We returned to port through the Duluth entrance, and as we entered the canal captain Mike King announced our arrival with a blast of the Blue Heron’s air horn. Duluth’s landmark Aerial-Lift Bridge, already raised for our return entry, responded in kind with a shrill loud blast of its own. Tourists lining the pier called out and waved as we passed the old lighthouse and rolled toward the harbor. We all waved back and I have to say it was kind of a thrill, for me anyway, after having participated in the same ritual, oh probably a hundred times in the past but always from the pier not from a vessel.

Return to harbor: The Blue Heron heads back to port after passing under Duluth's landmark Aerial-Lift Bridge.
Return to harbor: The Blue Heron heads back to port after passing under Duluth's landmark Aerial-Lift Bridge.Courtesy Mark Ryan
The Blue Heron swung in through the harbor, and soon we were back at port where we started at the Corps of Engineers Vessel Yard. Charlie Matsch was there to greet us and take for the second leg of the field trip.

Charlie took us first up the hillside to the rocky knob near the landmark memorial Enger Tower where he showed us some interesting exposures of gabbro, an intrusive rock common to the geological formation known as the Duluth Complex. Much of the bluffs west of downtown Duluth are composed of this dark, course-grained mafic rock. Now, I admit I enjoy a geological outcrop as much as the next guy (especially when a real geologist is explaining it), but it was the sweeping view from the hilltop that drew my attention. The Blue Heron: cuts through Duluth's harbor for another excursion on Lake Superior.
The Blue Heron: cuts through Duluth's harbor for another excursion on Lake Superior.Courtesy Mark Ryan
The lake and harbor and much of the St. Louis river bay stretched out below us in an array of vivid blues contrasting with the bright reds and golds of autumn. On one side of the harbor, bridges, railroads, and structures of industry jutted out on Rice's Point toward Wisconsin, paralleled on the other side by the slender ribbon of Park Point. As I took in this grand vista, a small, barely discernible bluish blur of movement caught my eye. There, cutting through the harbor, the Blue Heron headed southward toward the Superior entrance for another run on the great lake.

More photos on Flickr
More about Blue Heron
Lake Superior facts
Lake Superior video

Nov
01
2011

Zombies are not real right now because it is impossible. Well, until a scientist screws up. In the movies zombies are people that get infected from a source, it is unlikely that it will happen in our lifetime, but scientifically it will be brains( how ironic ), not bronze that prevails over this threat of zombies. The virus would most likely be like the T virus in Resident Evil, but we probably will never know. What do you think??? I was reading a article from the CDC and they say that it might be possible for a zombie apocalypse to happen! How do you think you would prepare for this??? Well we don't know. We honestly don't. Scientifically we would never truly be ready. And for an Awnser I don't want, "my dad has a gun"!!! Actual science reasons here. Heck, it might be a parasite for all we know, then again, your mom or dad may get it first( that would suck! ), or your sister, or brother. We will never know until we realize that nothing is impossible in science. Scientifically I should say, ELECTRICITY would go down first! Then GAS would eventually run out. Cities would be safe most of the time, because all the people would go out to the country.

Then all the people left would be in shock, and/or, injured and extremely prejudiced, but some will still be sane, like me, I know how to keep alive in a Z.A. but some people would not, but, scientifically someone will be smart and start remaking our civilization, but who knows maybe we will all die? You never know how things will turn out. What are your comments??? I would love to hear them.
EDITED BY LIZA, 11/1/2011: Hey, Buzzketeers! Still need a post-Halloween zombie fix, like ZombieDestroyer here? Head on over to the zombies page. You'll find out about a new zombie-fighting weapon, a real-life zombie-making parasite, and a very long-running thread about whether or not a zombie apocalypse is possible. (And if you feel a need to argue zombie-fighting strategies or likelihood, take it over to that last thread and keep it science-y, y'all!)

Aug
04
2011

The Moon: According to a recent study, it's two moons in one.
The Moon: According to a recent study, it's two moons in one.Courtesy Mark Ryan
A new study published in Nature proposes that our Moon once had a companion satellite that it eventually accreted in a celestial collision. Planetary scientists, Erik Asphaug, of the University of California, Santa Cruz, and Martin Jutzi of the University of Bern in Switzerland devised computer simulations that show how it could have happened.

According to present lunar origin theory, four and half billion years ago, while the Earth’s system was forming, gravitational forces attracted a Mars-sized object that collided with the early Earth. The collision - more of a glancing blow than a direct hit - tossed terrestrial material into space that coalesced into our Moon. But during the period of coalescence – perhaps for tens of millions of years - a smaller companion moon (about 1/3 the size of the larger moon) would have been visible in Earth’s primitive sky. Geologically speaking, the mini moon’s existence would have been short-lived. The system was unstable, and sooner or later the moonlet’s orbit would decay and it would be pulled either into Earth’s mass or into that of the larger satellite.

Computer simulations set up by Asphaug and Jutzi reconstruct the latter taking place. The researchers propose that the dominant moon was still in a semi-molten state when its smaller companion collided with it at a sub-sonic speed. Being smaller, the doomed moon would have cooled faster and would have been more solidified, but the collision was hardly devastating. It’s low impact speed made it more like a clump of mud being lobbed against a wall. There wasn’t enough force in the collision to punch through, but just enough to make it stick.

More evidence: lunar composition differences

During NASA’s Apollo lunar program in the late 60s and early 70s, astronauts collected several samples of rock from the near side landing sites. The rocks brought back proved rich in potassium (K), rare earth elements (REE) and phosphorus (P) – hence the acronym. These elements, which are scarcer on the Moon’s dark side, crystallize very slowly in cooling magma, and remain molten until the entire mass of magma solidifies. So according to the researchers, when the collision occurred, it was enough to push much of the still molten magma - and the KREEP along with it - to the near side, and leave a pile of mountainous terrain on the far side.

I find this all pretty fascinating. The hypothesis answers several questions that have been puzzling lunar scientists for several years, and fits well into what we observe now. Of course we only see the Moon’s near side. Gravitational forces keep much of the far side hidden from us except via photography and lunar probes (Why that is can be learned here).

SOURCE and LINKS
Story in Scientific American
Story on Weather Space.com
Apollo Lunar Program

May
10
2011

Sometimes we here at Nano Headquarters grow weary of reading and attempting to decipher scientific papers in ways that make them easy to understand.

Take, for example, this sentence:

“The as-prepared gold particles showed good catalytic activity for the reduction of 4-nitrophenol to 4-aminophenol by excess NaBH4, and a surface-enhanced Raman scattering (SERS) study suggested that the gold nanoparticles exhibited a high SERS effect on the probe molecule Rhodamine 6G.”

Here’s what we were able to immediately comprehend:

“The as-prepared gold particles showed good BEEEEEEEP for the reduction of BEEEEEEEP to BEEEEEEEP by excess BEEEEEEEP, and a surface-enhanced BEEEEEEEP BEEEEEEEP BEEEEEEEP study suggested that the gold nanoparticles exhibited a high BEEEEEEEP effect on the probe molecule BEEEEEEEP BEEEEEEEP”

On days like this, we like to practice what we call "selective avoidance" and seek out pretty images instead. Pretty nano-related images, mind you – but pretty images nonetheless. They soothe our bleeding brains. And so, for your BEEEEEEEP-free pleasure, we offer you this here compendium of pretty nano images:

Pretty!: Pollen Grains
Pretty!: Pollen GrainsCourtesy Dartmouth Electron Microscope Facility

NOVA - The Art of Nanotech
Remember our friends over at NOVA who made the nanorrific Making Stuff series? This here slideshow was a little buried treasure accompanying it. The images are originally from the Materials Research Society - Science as Art competition. We’re a little partial to the Starry Night knockoff. Van Gogh would be impressed. And if not, then we wouldn’t have wanted to be his friend anyway because apathy gets boring fast and huffy, stuffy artists are tedious.

Sciencescapes Speaking of the Science as Art competition – here are a few more images from competitions in years past. From likenesses of spaghetti and meatballs to a decaying Santa to a creepy Pac-Man to a dotted-dude walking off a cliff to his ultimate doom, there’s a little something here for everyone.
Also Pretty!: Water Droplet on Nasturtium Leaf
Also Pretty!: Water Droplet on Nasturtium LeafCourtesy Stephan Herminghaus

International Science and Engineering Visualization Challenge
A video from the National Science Foundation wherein they invite us to “discover the artistry behind the 2010 International Science & Engineering Visualization Challenge winners as they explain the processes, techniques and thoughts behind their entries.” SPOILER ALERT: The very first fellow we meet tells us right out that there’s “no message” to his work. Awesome.

Silver Saver – nanotech in art preservation Think that the old, old artifacts you see in museums just stay that way because they’re in a fancy, climate-controlled case? Think again!
Equally Pretty!: Silicon Nanomembrane
Equally Pretty!: Silicon NanomembraneCourtesy S. Scott, University of Wisconsin-Madison

NISE Net Viz Lab All the pretty, pretty pictures you’ve seen in this post thus far are from the NISE Net Viz Lab. And guess what? They’re in the public domain! That means you can use them however you like without going through all sorts of crazy legal hoops! Whee! Just remember to give credit where credit it due – ‘cause we’re pretty sure you don’t have a scanning electron microscope at home.

SPECIAL NOT-NECESSARILY-NANO BONUS:
The Periodic Table Printmaking Project We could look at these for DAYS. In fact, we have. Take the Periodic Table of the elements, mix in a few block-print makers, and what do you get? Some seriously killer prints that provide visual intrigue for such favorites as Promethium and Fluorine. We will admit to getting a little googley-eyed over these.

Okay kids, stop swooning. Back to work.

Mar
29
2011

By the way, when you read about the gigatons of carbon emissions that human activities emit each year, it's helpful to have some perspective:

Let's talk gigatons--one billion tons. Every year, human activity emits about 35 gigatons of [carbon dioxide] (the most important greenhouse gas). Of that, 85% comes from fossil fuel burning. To a lot of people, that doesn't mean much -- who goes to the store and buys a gigaton of carrots? For a sense of perspective, a gigaton is about twice the mass of all people on earth, so 35 gigatons is about 70 times the weight of humanity. Every year, humans put that in the atmosphere, and 85% of that is power. Large actions, across whole nations and whole economies, are required to move the needle.

By comparison, our atmosphere is small--99.99997% of our its mass sits below the Karman line, which is often used to define the border between Earth’s atmosphere and outer space. At 62 miles above Earth's surface, it’s about as high as the distance between St. Paul, MN, and Menomonie, WI.

The oceans also absorb some of that carbon dioxide, but not without consequence.

Of course, the great part about being responsible is having capability--if our inventions bring about such transformations in the air and oceans, then couldn't we be inventive enough to reduce their negative impacts?

Mar
14
2011

The Fukushima plant: Before the earthquake.
The Fukushima plant: Before the earthquake.Courtesy KEI
Ok, well, there isn’t really such a thing as a nuclear earthquake. “Nuclear Earthquake” just sounds impressive. And I suppose “impressive” is one way to describe what’s happening in Japan right now.

I suppose you’re all aware of the 8.9 (or possibly 9.0) rated earthquake that hit Japan last week (if you aren’t, check out this post), and that the Fukushima nuclear power station there has been severely damaged.

While the country is still trying to put itself together, officials are still trying to get the power plant under control. So what happened, what’s happening, and what’s (probably) going to happen?

Well, a nuclear plant like Fukushima basically operates by using radioactive uranium to boil water. The uranium is always decaying—the number of protons and neutrons it has isn’t stable, so neutrons fly off, causing heat. If the neutrons hit other neutrons in the uranium, they fly off too, causing even more heat. If there’s too much of this neutron-on-neutron action, the uranium will get too hot, melt everything around it, and it’s a disaster. This is what happened at Chernobyl.

To prevent the neutron reaction from getting out of control, and to make sure the uranium produces just the right amount of heat, “control rods” are inserted in with the uranium fuel. The control rods absorb some of the neutrons to keep the reaction under control. When the right amount of heat is being produced, the water around the fuel boils, turns to steam, and spins electric generators. It works out pretty well.

At Fukushima, the control rods were inserted into the uranium as soon as the earthquake started, and they did work—the uranium reaction was shut down. But the decaying uranium had already produced other elements, elements with a lot of heat of their own. So there was a lot of residual heat in the power station.

Normally, water would keep circulating around the hot core, carrying away the residual heat (and turning it into electricity). But between the earthquake and the ensuing tsunami, the power to the water pumps was shut off and the backup generators were disabled. The pumps had backup batteries, but eventually those ran out. That means there was still a lot of heat in the core, but no fresh water to carry it away. The water that was there would continue to heat up until the steam was vented or the vessel containing it simply burst.

Unfortunately, both of those things sort of happened. While purposely venting some of the steam, an explosion happened in the building surrounding one of the cores. According to this site, this is probably because some of the vented water vapor had separated into hydrogen and oxygen, which built up in the building and ignited. This whole situation (the venting and the steam) was radioactive, but not that bad as those things go—the radioactive elements decayed and became stable in a very short time.

The next problem was that with all the venting, the water level around the cores was slowly falling. Without water to take away their heat, the cores could overheat, and eventually melt down. This started to happen, and some more dangerous radioactive products of the uranium started to mix with the remaining water and steam, so officials decided to start pumping seawater into the core. Seawater can get more radioactive than clean water, but it would keep the core cool and under control. And it did.

Today, there was a second explosion at the plant, however. I’m not totally sure what caused this, but it looks like it was again from the accumulation of hydrogen in one of the buildings.

With the uranium reaction under control and the cores under water, the residual heat should eventually dissipate. But the explosions have further damaged the cooling systems, and keeping the multiple cores at the station submerged in seawater has been a challenge. The longer the cores are exposed, the harder it is to control radioactive material already produced by the cores, and the greater the chance of a meltdown occurring at the plant.

Approximately 200,000 people living in the region of the nuclear plant have been evacuated, and it’s still unclear what will happen there. Nothing good certainly, but a meltdown isn’t a sure thing at this point, and even if a meltdown were to occur (again, a meltdown happens when there’s too much heat in the core, and everything around the radioactive fuel melts), the Fukushima plant was built to much higher safety standards than Chernobyl was, and it should contain the damage much more effectively. At Chernobyl, explosions sent radioactive material into the atmosphere and over the surrounding area. At Fukushima, as I understand it, the radioactive products of a meltdown would be contained inside extremely thick, tough containers, which, so far, have not been damaged by the earthquake or the explosions.

There’s more to be said about what will happen, and how this might affect the world’s attitude toward nuclear power, and whether that’s a good thing or not … but that will have to wait for another post.

Update: A Third Explosion at Fukushima
A there's been another explosion at the Fukushima nuclear plant. Now three of the four reactors at Fukushima have experienced an explosion. The previous two explosions were probably caused by a buildup of hydrogen, but it isn't certain whether that was the cause of this explosion as well.

The vents that emergency workers had hoped to use to flood the reactor chamber with seawater were malfunctioning, meaning that the core was dry (and un-cooled) for several hours. The vents finally started working in the early morning, but the chamber wasn't filling with water the way they had hoped, perhaps because of a leak.

A meltdown is still possible, but while radiation levels in the area are considered "elevated," they are low enough that it's very unlikely that the vessels that contain the reactor cores have been breached.

3/15/11 Update: Fire at 4th reactor
Shortly after the explosion at reactor 2 (the third explosion), a fire started at reactor 4. Between the fire and the explosion, radiation levels at the site briefly spiked to about 167 times the average annual dose. Reactor 4 actually wasn't producing power when the tsunami hit, but it did contain a cooling pool for spent fuel assemblies.

Nuclear fuel that has decayed to the point where it's not useful for sustaining a nuclear reaction still produces a lot of heat, and so it's stored in a pool of water for years to deal with the heat and radiation. Reactor 4 at Fukishima has one of these pools, and—just like with the active reactors—it looks like the cooling system was malfunctioning, which allowed the water in the pool to boil away, exposing the spent fuel. The spent fuel likely heated up until it ignited, or caused a fire in the building.

Authorities are now warning people living as far as 20 miles away from the plant to stay inside to avoid any radioactive fallout. As for the emergency workers at Fukushima, CNN's expert says, "Their situation is not great. It's pretty clear that they will be getting very high doses of radiation. There's certainly the potential for lethal doses of radiation. They know it, and I think you have to call these people heroes."

Update: 2 Reactor containment vessels probably cracked
Japanese officials think that the spike of radiation around the Fukushima plant last night might have been associated with a cracked containment vessel in one of the reactors. Today, they think a second container might be cracked as well, and leaking radioactive steam.

Feb
10
2011

Lisa Jackson: The head of the EPA met with House Republicans recently to discuss carbon regulation.
Lisa Jackson: The head of the EPA met with House Republicans recently to discuss carbon regulation.Courtesy EPA
I'm assuming that you aren't at home watching dense legal proceedings related to the regulation of molecules in our atmosphere. So here's the timeline of a recent important story.

  1. Humans figure out how to turn things (engines, turbines) by burning coal and petroleum. This makes like life a whole lot better in lots of ways.
  2. Scientists figure out that, all that burning is causing some problems. When we burn that stuff, we put carbon in the atmosphere and that's disrupting the natural climate system leading to all kinds of problems.
  3. Some different humans hear about this science and think we should pass a law. This law should put some limits on how much carbon we put into the atmosphere.
  4. The humans in the Republican controlled House don't like this idea, because they think these limits would cripple the economy. Oh, and some of them don't even believe the scientists. Since these Republicans are in charge right now, no new law.
  5. The humans over at the Environmental Protection Agency, who are mostly scientists, notice that they should already be regulating all this carbon, because of an existing law, the Clean Air Act.
  6. The Supreme Court agrees
  7. The House Republicans, disagree and call a hearing with the head of the EPA.
  8. Who knows what's next...

OK, you're up to date. Unfortunately the media is framing this issue in military terms. "The coming battle." "EPA and Republicans spar over climate change." "EPA blocks Republican rocket launcher with sweet ion science shield." Yeah, I made that last one up. But we don't need battles, we need conversations and action.

My point is that this issue is a great opportunity to have a discussion about how science is used in our public policy decisions. Do you think the EPA is too focused on the scientific findings related to climate change? Are they ignoring the economic impacts? Are you frustrated with some of the Republican views that outright deny the scientific findings on what's causing climate disruption? Are they ignoring real facts? Could this issue be alleviated by better science education?